Seems like you've got your rose tinted glasses on. The first universities were established by religious leaders to organize/control priestly power. Basically the same as today.
Seems like your off. The first universities were the Acadamy of Plato and the rehtorical schools of the ancient Greeks.
During the middle ages the universities were associated with the monastaries because those were the few places where literate people congregated.
Plus there were only 5 areas of study in the early university.
- Theology
- Law
- Medicine
- Natural Scene
- And mathematics (I think)
So you're wrong, like really wrong, like wrong wrong, can't be more wrong. But hey I'm sure if you go back to /r/athiesm you'll get some more good talking points.